CADStat
About CADStat
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Version: 2.2-3
Result: WARNING Check time: 2010-03-19 15:57 * checking for working pdflatex ... OK * using log directory '' * using R version 2.10.0 Patched (2009-11-16 r50454) * using session charset: ISO8859-1 * checking for file 'CADStat/DESCRIPTION' ... OK * this is package 'CADStat' version '2.2-3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking for executable files ... WARNING Found the following executable file(s): inst/scripts/jgr.exe Source packages should not contain undeclared executable files. See section 'Package structure' in manual 'Writing R Extensions'. * checking whether package 'CADStat' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK WARNING: There was 1 warning, see /00check.log for details Installation log: 00install.out
Build log for Windows* checking for file 'CADStat/DESCRIPTION' ... OK* preparing 'CADStat': * checking DESCRIPTION meta-information ... OK * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'CADStat' ... Using auto-selected zip option '--use-zip-data' ** R ** data ** inst ** preparing package for lazy loading Loading required package: rJava Error in utils::readRegistry(key, "HLM", 2) : Registry key 'Software\JavaSoft\Java Runtime Environment' not found Error in utils::readRegistry(key, "HLM", 2) : Registry key 'Software\JavaSoft\Java Development Kit' not found Error in fun(...) : JAVA_HOME cannot be found from the Registry Error : .onLoad failed in 'loadNamespace' for 'rJava' Error : package 'rJava' could not be loaded ERROR: lazy loading failed for package 'CADStat' * removing 'c:/tmp/Rinst175655697/CADStat' ERROR * installation failed Build log for Mac OS X 10.4* checking for file 'CADStat/DESCRIPTION' ... OK* preparing 'CADStat': * checking DESCRIPTION meta-information ... OK * removing junk files * checking for LF line-endings in source files * checking for empty or unneeded directories * building binary distribution * Installing *source* package 'CADStat' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: JGR Loading required package: rJava Loading required package: JavaGD Loading required package: iplots Note: On Mac OS X we strongly recommend using iplots from within JGR. Proceed at your own risk as iplots cannot resolve potential ev.loop deadlocks. 'Yes' is assumed for all dialogs as they cannot be shown without a deadlock, also ievent.wait() is disabled. 2007-10-03 04:01:50.323 R[22581] [Java CocoaComponent compatibility mode]: Enabled 2007-10-03 04:01:50.323 R[22581] [Java CocoaComponent compatibility mode]: Setting timeout for SWT to 0.100000 Please use the corresponding JGR launcher to start JGR. Run JGR() for details. You can also use JGR(update=TRUE) to update JGR. Attaching package: 'JGR' The following object(s) are masked from package:utils : package.manager Loading required package: gdata Loading required package: gmodels Loading required package: car Loading required package: MASS Loading required package: quantreg Loading required package: SparseM Package SparseM (0.73) loaded. To cite, see citation("SparseM") Loading required package: rpart Loading required package: RSvgDevice Loading required package: XML ** help >>> Building/Updating help pages for package 'CADStat' Formats: text html latex example bcnt.OR text html latex example bcnt.emapw text html latex example bcnt.otu.OR text html latex example bcnt.tax.OR text html latex example benthicCount text html latex bio.infer.package text html latex bkg.comp text html latex boxplot.JGR text html latex coef.west.wt text html latex example conditionalprob.JGR text html latex cor.JGR text html latex missing link(s): rq env.data text html latex envdata.emapw text html latex example envdata.or text html latex example ept.embed text html latex eptpctfn text html latex fish.caught text html latex fish.lwr text html latex formtomat text html latex get.otu text html latex example get.taxonomic text html latex example infergui text html latex itis.ttable text html latex example lm.JGR text html latex missing link(s): rq load.revised text html latex load.revised.otu text html latex load.revised.species text html latex makess text html latex example mlsolve text html latex example modaldialog text html latex nes text html latex rpart.JGR text html latex missing link(s): rq rq.JGR text html latex scatterplot.JGR text html latex missing link(s): rq site.species text html latex site.species.or text html latex speciestol.JGR text html latex ss.OR text html latex example taxon.env text html latex example tklist.modal text html latex example view.te text html latex example ** building package indices ... packaged installation of 'CADStat' as CADStat_2.0-8_R_i386-apple-darwin8.9.1.tar.gz * DONE (CADStat) Build log for Windows 64-bit* checking for file 'CADStat/DESCRIPTION' ... OK* preparing 'CADStat': * checking DESCRIPTION meta-information ... OK * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'CADStat' ... Using auto-selected zip option '--use-zip-data' ** R ** data ** inst ** preparing package for lazy loading Loading required package: rJava Loading required package: JavaGD Loading required package: iplots Please use the corresponding JGR launcher to start JGR. Run JGR() for details. You can also use JGR(update=TRUE) to update JGR. Loading required package: tcltk Loading Tcl/Tk interface ... done Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : there is no package called 'gtools' Error : package 'gdata' could not be loaded ERROR: lazy loading failed for package 'CADStat' * removing 'c:/tmp/Rinst264421963/CADStat' ERROR * installation failed Build log for Mac OS X 10.5* checking for file 'CADStat/DESCRIPTION' ... OK* preparing 'CADStat': * checking DESCRIPTION meta-information ... OK * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution * installing *source* package 'CADStat' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: rJava Loading required package: JavaGD Loading required package: iplots Note: On Mac OS X we strongly recommend using iplots from within JGR. Proceed at your own risk as iplots cannot resolve potential ev.loop deadlocks. 'Yes' is assumed for all dialogs as they cannot be shown without a deadlock, also ievent.wait() is disabled. 2010-03-17 13:35:54.428 R[74711:613] Apple AWT Java VM was loaded on first thread -- can't start AWT. Error in .jnew("org/rosuda/iplots/Framework") : java.lang.InternalError: Can't start the AWT because Java was started on the first thread. Make sure StartOnFirstThread is not specified in your application's Info.plist or on the command line Error : package 'iplots' could not be loaded ERROR: lazy loading failed for package 'CADStat' * removing '/private/var/folders/JA/JAolSeAcFueOWF1Uy33XRk+++TI/-Tmp-/Rinst7468534501/CADStat' ERROR * installation failed |