Deducer

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Package R docs

Version: 0.7-7
Result: ERROR
Check time: 2018-01-24 20:12

* using log directory ''
* using R Under development (unstable) (2018-01-24 r74156)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'Deducer/DESCRIPTION' ... OK
* this is package 'Deducer' version '0.7-7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialized R objects in the sources ... OK
* checking whether package 'Deducer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Checking should be performed on sources prepared by 'R CMD build'.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
as.matrix.cor.matrix plot.cor.matrix print.contin.table
print.contin.tests print.contingency.tables print.cor.matrix
print.freq.table print.multi.test sort.data.frame summary.lm
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
add.chi.squared : : no visible global function definition
for 'chisq.test'
add.correlation : corr: no visible global function definition for
'cor.test'
add.fishers.exact : : no visible global function definition
for 'fisher.test'
add.kruskal : krusk.rows: no visible global function definition for
'kruskal.test'
add.kruskal : krusk.cols: no visible global function definition for
'kruskal.test'
add.mantel.haenszel : : no visible global function
definition for 'mantelhaen.test'
chi.noncentral.conf: no visible global function definition for 'pchisq'
contingency.tables : single.table: no visible global function
definition for 'chisq.test'
cor.matrix: no visible binding for global variable 'cor.test'
cor.matrix: no visible global function definition for 'na.omit'
deducer: no visible global function definition for 'menu'
descriptive.table : : no visible global function definition
for 'sd'
descriptive.table : : no visible global function definition
for 'median'
descriptive.table : : no visible global function definition
for 'quantile'
ggcorplot : ezLev: no visible global function definition for 'relevel'
ggcorplot: no visible global function definition for 'sd'
ggcorplot: no visible global function definition for 'na.omit'
ggcorplot: possible error in layer(geom = "line", geom_params =
list(colour = "red"), stat = "smooth", stat_params = list(method =
line.method), data = z, mapping = aes(x = x_var, y = y_var)): unused
arguments (geom_params = list(colour = "red"), stat_params =
list(method = line.method))
ggcorplot: possible error in layer(geom = "ribbon", geom_params =
list(fill = "green", alpha = 0.5), stat = "smooth", stat_params =
list(method = line.method), data = z, mapping = aes(x = x_var, y =
y_var)): unused arguments (geom_params = list(fill = "green", alpha =
0.5), stat_params = list(method = line.method))
ggcorplot: no visible binding for global variable 'cor'
ggcorplot: possible error in layer(geom = "text", geom_params =
list(size = var_text_size), data = diag, mapping = aes(x = y_mid, y =
x_mid, label = x_label)): unused argument (geom_params = list(size =
var_text_size))
k.sample.test: no visible binding for global variable 'oneway.test'
k.sample.test: no visible global function definition for 'na.omit'
likelihood.test: no visible global function definition for
'complete.cases'
likelihood.test: no visible global function definition for 'pchisq'
one.sample.test: no visible binding for global variable 't.test'
one.sample.test: no visible global function definition for 'na.omit'
onesample.plot: no visible global function definition for 'sd'
onesample.plot: no visible global function definition for 'na.omit'
oneway.plot: no visible global function definition for 'sd'
oneway.plot: no visible global function definition for 'na.omit'
perm.t.test: no visible global function definition for 'na.omit'
perm.t.test: no visible binding for global variable 'var'
plot.cor.matrix: no visible binding for global variable 'cor'
print.contin.table: no visible global function definition for
'capture.output'
sort.data.frame: no visible global function definition for 'as.formula'
summary.lm: no visible global function definition for 'coef'
summary.lm: no visible global function definition for 'pt'
two.sample.test: no visible binding for global variable 't.test'
two.sample.test: no visible global function definition for 'na.omit'
Undefined global functions or variables:
as.formula capture.output chisq.test coef complete.cases cor cor.test
fisher.test kruskal.test mantelhaen.test median menu na.omit
oneway.test pchisq pt quantile relevel sd t.test var
Consider adding
importFrom("stats", "as.formula", "chisq.test", "coef",
"complete.cases", "cor", "cor.test", "fisher.test",
"kruskal.test", "mantelhaen.test", "median", "na.omit",
"oneway.test", "pchisq", "pt", "quantile", "relevel", "sd",
"t.test", "var")
importFrom("utils", "capture.output", "menu")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in 'Deducer-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggcorplot
> ### Title: Correlation matrix
> ### Aliases: ggcorplot
>
> ### ** Examples
>
> data(mtcars)
> corr.mat1<-cor.matrix(variables=d(mpg,carb,carb+rnorm(length(carb))),,
+ data=mtcars,
+ test=cor.test,
+ method='spearman',
+ alternative="two.sided",exact=FALSE)
>
> p<-ggcorplot(corr.mat1,data = mtcars)
Error: Attempted to create layer with no stat.
Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 3 NOTEs
See
'/00check.log'
for details.

Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log