guitar - guitar provides libgit2 bindings for R - check results


About guitar
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Check results
Package R docs

Check time: 2021-09-08 05:27
* using log directory ''
* using R Under development (unstable) (2021-09-06 r80865)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--as-cran'
* checking for file 'guitar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'guitar' version ''
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'roxygen2'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package 'guitar' can be installed ... WARNING
Found the following significant warnings:
libgit2/path.c:937:2: warning: 'readdir_r' is deprecated [-Wdeprecated-declarations]
libgit2/path.c:1012:2: warning: 'readdir_r' is deprecated [-Wdeprecated-declarations]
See '00install.out' for details.
* checking installed package size ... NOTE
installed size is 25.4Mb
sub-directories of 1Mb or more:
libs 25.3Mb
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
GPL-2 plus linking exception (same as libgit2)
Standardizable: FALSE
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found the following non-empty subdirectories of 'inst' also used by R:
It is recommended not to interfere with package subdirectories used by
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'BH' 'methods' 'stringr'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
add_file_to_head: no visible global function definition for 'str_c'
remove_file_from_head: no visible global function definition for
Undefined global functions or variables:
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
'Index' 'ODB' 'ODBObject' 'OID' 'Reference' 'Repository' 'Tag' 'Tree'
'TreeEntry' 'add_file_to_head' 'commit_HEAD_changes' 'make_signature'
'remove_file_from_head' 'repository_clone' 'repository_init'
Undocumented S4 classes:
'Rcpp_Tag' 'Rcpp_TreeEntry' 'Rcpp_Blob' 'Rcpp_Reference' 'Rcpp_Index'
'Rcpp_ODB' 'Rcpp_OID' 'Rcpp_ODBObject' 'Rcpp_Commit' 'Rcpp_Tree'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif, .NOTPARALLEL See section 'Writing portable
packages' in the 'Writing R Extensions' manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File 'guitar/libs/':
Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'

It is good practice to register native routines and to disable symbol

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'test-all.R'
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK

Status: 4 WARNINGs, 7 NOTEs
for details.

Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log

Build log for Windows 7 (R 3.0.x)

(guitar 0.0.1)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'guitar' ...
** libs

*** arch - i386
g++ -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"C:/Program Files/R/R-3.0/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c blob.cpp -o blob.o
In file included from blob.h:3:0,
from blob.cpp:1:
guitar.h:5:18: fatal error: git2.h: No such file or directory
compilation terminated.
make: *** [blob.o] Error 1
ERROR: compilation failed for package 'guitar'
* removing 'z:/rforge/Rlib/win7-3.0/guitar'