iotools - Experimental I/O tools to run distributed R jobs seamlessly and handle chunk-wise data processing - check results


About iotools
GIT access
Check results
Package R docs

Version: 0.3-5
Result: OK
Check time: 2023-11-30 21:57
* using log directory ‘’
* using R Under development (unstable) (2023-11-28 r85645)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Debian 10.2.1-6) 10.2.1 20210110
GNU Fortran (Debian 10.2.1-6) 10.2.1 20210110
* running under: Debian GNU/Linux 11 (bullseye)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘iotools/DESCRIPTION’ ... OK
* this is package ‘iotools’ version ‘0.3-5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘iotools’ can be installed ... OK
* used C compiler: ‘gcc (Debian 10.2.1-6) 10.2.1 20210110’
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File ‘iotools/libs/’:
Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’,
File ‘iotools/libs/’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test.R’
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK

Status: 1 NOTE
for details.

Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log

Build log for Windows 7 (R 3.0.x)

(iotools 0.1-1)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'iotools' ...
** libs

*** arch - i386
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ctapply.c -o ctapply.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c lnchunk.c -o lnchunk.o
lnchunk.c: In function 'last_key_back':
lnchunk.c:131:18: warning: unused variable 'ckey' [-Wunused-variable]
lnchunk.c:111:43: warning: variable 'key0' set but not used [-Wunused-but-set-variable]
lnchunk.c:135:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c split.c -o split.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c stdin.c -o stdin.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c unix.c -o unix.o
unix.c:2:17: fatal error: pwd.h: No such file or directory
compilation terminated.
make: *** [unix.o] Error 1
ERROR: compilation failed for package 'iotools'
* removing 'z:/rforge/Rlib/win7-3.0/iotools'