largescaleobjects
About largescaleobjects
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Version: 1.0
Result: ERROR Check time: 2023-11-26 08:06 * using log directory ‘’ * using R Under development (unstable) (2022-11-28 r83388) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--as-cran’ * checking for file ‘largescaleobjects/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘largescaleobjects’ version ‘1.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘largescaleobjects’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': MIT * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘makefile’ * checking for left-over files ... OK * checking index information ... WARNING Empty or missing file ‘demo/00Index’. See sections ‘The INDEX file’ and ‘Package subdirectories’ in the ‘Writing R Extensions’ manual. * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘orcv’ Package in Depends field not imported from: ‘iotools’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... WARNING head: function(x, ...) head.DistributedObject: function(x) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE RecyclesWithChunks: no visible global function definition for ‘oldclass’ checkpoint: no visible global function definition for ‘location’ index.numeric: no visible global function definition for ‘is.DistributedObject’ index.numeric: no visible global function definition for ‘chunkReferenceArray’ prune: no visible global function definition for ‘chunkReferenceArray’ send_indices : ‘do.ccall’ t.ChunkReferenceArray: no visible binding for global variable ‘X’ write.dcsv: no visible global function definition for ‘pull’ Undefined global functions or variables: X chunkReferenceArray do.ccall is.DistributedObject location oldclass pull * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘DistributedObject’ ‘DistributedObjectReference’ ‘checkpoint’ ‘combine’ ‘dReduce’ ‘dematerialise’ ‘distribute’ ‘dpath’ ‘map_reduce’ ‘materialise’ ‘object.size’ ‘read.dcsv’ ‘read.dmatrix’ ‘read.lcsv’ ‘restore’ ‘shuffle’ ‘table’ ‘write.dcsv’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'emerge': emerge.default Code: function(x, combiner, ...) Docs: function(x, combiner = TRUE, ...) Mismatches in argument default values: Name: 'combiner' Code: Docs: TRUE * checking Rd \usage sections ... WARNING Objects in \usage without \alias in documentation object 'emerge': ‘emerge.default’ ‘emerge.DistributedObject’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. S3 methods shown with full name in documentation object 'emerge': ‘emerge.default’ ‘emerge.DistributedObject’ The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking include directives in Makefiles ... OK * checking examples ... ERROR Running examples in ‘largescaleobjects-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: do.dcall > ### Title: Execute a call over a distributed object. > ### Aliases: do.dcall d > > ### ** Examples > > > d.model.matrix <- d(model.matrix) > d.model.matrix(object=~ a + b, dd) Error in do.dcall(what, args = list(...)) : object 'dd' not found Calls: d.model.matrix -> do.dcall Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 6 WARNINGs, 3 NOTEs See ‘/00check.log’ for details. Installation log: 00install.out
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