largescaleobjects - Provides a Distributed Framework for Statistical Modelling - check results
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largescaleobjects

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Package R docs

Version: 1.0
Result: ERROR
Check time: 2024-06-05 23:12
* using log directory ‘’
* using R Under development (unstable) (2023-11-28 r85645)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Debian 10.2.1-6) 10.2.1 20210110
GNU Fortran (Debian 10.2.1-6) 10.2.1 20210110
* running under: Debian GNU/Linux 11 (bullseye)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘largescaleobjects/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘largescaleobjects’ version ‘1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘largescaleobjects’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
‘makefile’
* checking for left-over files ... OK
* checking index information ... WARNING
Empty or missing file ‘demo/00Index’.
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: ‘orcv’
Package in Depends field not imported from: ‘iotools’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... WARNING
head:
function(x, ...)
head.DistributedObject:
function(x)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
RecyclesWithChunks: no visible global function definition for
‘oldclass’
checkpoint: no visible global function definition for ‘location’
index.numeric: no visible global function definition for
‘is.DistributedObject’
index.numeric: no visible global function definition for
‘chunkReferenceArray’
prune: no visible global function definition for ‘chunkReferenceArray’
send_indices : : no visible global function definition for
‘do.ccall’
t.ChunkReferenceArray: no visible binding for global variable ‘X’
write.dcsv: no visible global function definition for ‘pull’
Undefined global functions or variables:
X chunkReferenceArray do.ccall is.DistributedObject location oldclass
pull
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘DistributedObject’ ‘DistributedObjectReference’ ‘checkpoint’
‘combine’ ‘dReduce’ ‘dematerialise’ ‘distribute’ ‘dpath’ ‘map_reduce’
‘materialise’ ‘object.size’ ‘read.dcsv’ ‘read.dmatrix’ ‘read.lcsv’
‘restore’ ‘shuffle’ ‘table’ ‘write.dcsv’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'emerge.Rd':
emerge.default
Code: function(x, combiner, ...)
Docs: function(x, combiner = TRUE, ...)
Mismatches in argument default values:
Name: 'combiner' Code: Docs: TRUE

* checking Rd \usage sections ... WARNING
Objects in \usage without \alias in Rd file 'emerge.Rd':
‘emerge.default’ ‘emerge.DistributedObject’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
S3 methods shown with full name in Rd file 'emerge.Rd':
‘emerge.default’ ‘emerge.DistributedObject’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking include directives in Makefiles ... OK
* checking examples ... ERROR
Running examples in ‘largescaleobjects-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: do.dcall
> ### Title: Execute a call over a distributed object.
> ### Aliases: do.dcall d
>
> ### ** Examples
>
>
> d.model.matrix <- d(model.matrix)
> d.model.matrix(object=~ a + b, dd)
Error: object 'dd' not found
Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 6 WARNINGs, 3 NOTEs
See
‘/00check.log’
for details.


Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log