rJava
About rJava
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Version: 0.8-5
Result: OK Check time: 2010-09-02 11:58 * checking for working pdflatex ... OK * using log directory '' * using R version 2.11.0 (2010-04-22) * using session charset: ISO8859-1 * checking for file 'rJava/DESCRIPTION' ... OK * this is package 'rJava' version '0.8-5' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking for executable files ... OK * checking whether package 'rJava' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... OK * checking PDF version of manual ... OK Installation log: 00install.out
Build log for Windows (R 2.11.x)* checking for file 'rJava/DESCRIPTION' ... OK * preparing 'rJava': * checking DESCRIPTION meta-information ... OK * cleaning src Makevars.win:20: JAVA_HOME is C:\\jdk1.4.2_04 Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:\\jdk1.4.2_04/include -IC:\\jdk1.4.2_04/include/win32 make: Nothing to be done for `clean'. * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'rJava' ... Generate Windows-specific files (src/jvm-w32) ... make: Entering directory `/cygdrive/c/tmp/Rbuild104416955/rJava/src/jvm-w32' dlltool --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a gcc -O2 -c -o findjava.o findjava.c gcc -s -o findjava.exe findjava.o make: Leaving directory `/cygdrive/c/tmp/Rbuild104416955/rJava/src/jvm-w32' Find Java... JAVA_HOME=C:/jdk1.6 === Building JRI === JAVA_HOME=C:/jdk1.6 R_HOME=c:/PROGRA~1/r/R-211~1.0 Creating Makefiles ... Configuration done. make -C src JRI.jar make[1]: Entering directory `/cygdrive/c/tmp/Rbuild104416955/rJava/jri/src' C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/jdk1.6/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -c -o Rengine.o Rengine.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParse': Rengine.c:112: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniEval': Rengine.c:126: warning: cast to pointer from integer of different size Rengine.c:127: warning: cast to pointer from integer of different size Rengine.c:150: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniAssign': Rengine.c:170: warning: cast to pointer from integer of different size Rengine.c:171: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniProtect': Rengine.c:180: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniRelease': Rengine.c:192: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPreserve': Rengine.c:198: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPrintValue': Rengine.c:204: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParentEnv': Rengine.c:210: warning: cast to pointer from integer of different size Rengine.c:210: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniFindVar': Rengine.c:219: warning: cast to pointer from integer of different size Rengine.c:219: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniListEnv': Rengine.c:225: warning: cast to pointer from integer of different size Rengine.c:225: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSpecialObject': Rengine.c:232: warning: cast from pointer to integer of different size Rengine.c:233: warning: cast from pointer to integer of different size Rengine.c:234: warning: cast from pointer to integer of different size Rengine.c:235: warning: cast from pointer to integer of different size Rengine.c:236: warning: cast from pointer to integer of different size Rengine.c:237: warning: cast from pointer to integer of different size Rengine.c:238: warning: cast from pointer to integer of different size Rengine.c:239: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniXrefToJava': Rengine.c:247: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniJavaToXref': Rengine.c:257: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetString': Rengine.c:263: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetStringArray': Rengine.c:270: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetIntArray': Rengine.c:276: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetRawArray': Rengine.c:282: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI': Rengine.c:288: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetDoubleArray': Rengine.c:294: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetVector': Rengine.c:300: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniExpType': Rengine.c:306: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutString': Rengine.c:326: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutStringArray': Rengine.c:332: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutIntArray': Rengine.c:338: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutRawArray': Rengine.c:344: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI': Rengine.c:350: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArray': Rengine.c:356: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutDoubleArray': Rengine.c:362: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutVector': Rengine.c:368: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttr': Rengine.c:375: warning: cast to pointer from integer of different size Rengine.c:377: warning: cast to pointer from integer of different size Rengine.c:378: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttrNames': Rengine.c:385: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSetAttr': Rengine.c:417: warning: cast to pointer from integer of different size Rengine.c:419: warning: cast to pointer from integer of different size Rengine.c:419: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInstallSymbol': Rengine.c:432: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetSymbolName': Rengine.c:438: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInherits': Rengine.c:448: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCons': Rengine.c:459: warning: cast to pointer from integer of different size Rengine.c:459: warning: cast to pointer from integer of different size Rengine.c:461: warning: cast to pointer from integer of different size Rengine.c:461: warning: cast to pointer from integer of different size Rengine.c:463: warning: cast to pointer from integer of different size Rengine.c:464: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCAR': Rengine.c:471: warning: cast to pointer from integer of different size Rengine.c:472: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCDR': Rengine.c:481: warning: cast to pointer from integer of different size Rengine.c:482: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniTAG': Rengine.c:491: warning: cast to pointer from integer of different size Rengine.c:492: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutList': Rengine.c:507: warning: cast from pointer to integer of different size Rengine.c:512: warning: cast to pointer from integer of different size Rengine.c:517: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetList': Rengine.c:524: warning: cast to pointer from integer of different size Rengine.c:551: warning: cast from pointer to integer of different size gcc -c -o jri.o jri.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include jri.c: In function 'jri_putSEXPLArray': jri.c:193: warning: cast from pointer to integer of different size jri.c: In function 'jri_getObjectArray': jri.c:308: warning: cast from pointer to integer of different size jri.c: In function 'jri_getSEXPLArray': jri.c:472: warning: cast to pointer from integer of different size gcc -c -o Rcallbacks.o Rcallbacks.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include gcc -c -o Rinit.o Rinit.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -Ic:/PROGRA~1/r/R-211~1.0/include Rinit.c: In function 'initR': Rinit.c:248: warning: assignment from incompatible pointer type Rinit.c:254: warning: assignment from incompatible pointer type Rinit.c:277: warning: implicit declaration of function 'signal' gcc -c -o globals.o globals.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 gcc -c -o rjava.o rjava.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 make -C win32 libjvm.dll.a make[2]: Entering directory `/cygdrive/c/tmp/Rbuild104416955/rJava/jri/src/win32' dlltool --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a make[2]: Leaving directory `/cygdrive/c/tmp/Rbuild104416955/rJava/jri/src/win32' gcc -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -Lc:/PROGRA~1/r/R-211~1.0/src/gnuwin32 -Lc:/PROGRA~1/r/R-211~1.0/bin -lR -Wl,--kill-at C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/jdk1.6/bin/jar fc JRI.jar org jri.dll make[1]: Leaving directory `/cygdrive/c/tmp/Rbuild104416955/rJava/jri/src' rm -f jri.dll cp src/jri.dll jri.dll C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples\rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples\rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. echo "set PATH=%PATH%;c:/PROGRA~1/r/R-211~1.0\\bin;c:/PROGRA~1/r/R-211~1.0\\lib" > run.bat echo "C:/jdk1.6/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat === JRI built === Configuration done. ** libs making DLL ... Makevars.win:20: JAVA_HOME is C:/jdk1.6 Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c Rglue.c -o Rglue.o Rglue.c:831: warning: 'new_jrectRef' defined but not used gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c arrayc.c -o arrayc.o arrayc.c: In function 'RgetShortArrayCont': arrayc.c:161: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetCharArrayCont': arrayc.c:124: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetBoolArrayCont': arrayc.c:87: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetLongArrayCont': arrayc.c:294: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetFloatArrayCont': arrayc.c:260: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetDoubleArrayCont': arrayc.c:229: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetIntArrayCont': arrayc.c:56: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetByteArrayCont': arrayc.c:198: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetObjectArrayCont': arrayc.c:12: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetSimpleClassNames': arrayc.c:420: warning: 'jobj' may be used uninitialized in this function gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c callJNI.c -o callJNI.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c callback.c -o callback.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c fields.c -o fields.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c init.c -o init.o init.c: In function 'initJVM': init.c:140: warning: dereferencing type-punned pointer will break strict-aliasing rules init.c: In function 'RinitJVM': init.c:291: warning: dereferencing type-punned pointer will break strict-aliasing rules gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c jri_glue.c -o jri_glue.o jri_glue.c: In function 'PushToREXP': jri_glue.c:24: warning: cast from pointer to integer of different size jri_glue.c: In function 'RReleaseREXP': jri_glue.c:52: warning: cast to pointer from integer of different size gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c loader.c -o loader.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c otables.c -o otables.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c rJava.c -o rJava.o rJava.c: In function 'getJNIEnv': rJava.c:209: warning: dereferencing type-punned pointer will break strict-aliasing rules gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c tools.c -o tools.o gcc -shared -s -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Lc:/PROGRA~1/r/R-211~1.0/bin -lR installing to c:/tmp/Rinst104425897/rJava/libs ... done ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** MD5 sums ** testing if installed package can be loaded packaged installation of 'rJava' as rJava_0.8-5.zip * DONE (rJava) Build log for Mac OS X 10.4 (R 2.9.x)* checking for file 'rJava/DESCRIPTION' ... OK * preparing 'rJava': * checking DESCRIPTION meta-information ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution * Installing *source* package 'rJava' ... checking for gcc... gcc -arch i386 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -arch i386 -std=gnu99 accepts -g... yes checking for gcc -arch i386 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc -arch i386 -std=gnu99 supports static inline... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include' java libs : '-framework JavaVM' checking whether JNI programs can be compiled... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/private/tmp/Rbuild2340738057/rJava/jri) configure: running /bin/sh ./configure '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. checking build system type... i386-apple-darwin8.11.1 checking host system type... i386-apple-darwin8.11.1 checking for gcc... gcc -arch i386 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -arch i386 -std=gnu99 accepts -g... yes checking for gcc -arch i386 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok *** building fat JNI with gcc for architectures: i386 ppc *** *** use FORCE_NATIVE=yes to avoid this and use R settings *** checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs ** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c Rglue.c -o Rglue.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c arrayc.c -o arrayc.o arrayc.c: In function 'RgetLongArrayCont': arrayc.c:330: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetFloatArrayCont': arrayc.c:296: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetDoubleArrayCont': arrayc.c:265: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetByteArrayCont': arrayc.c:234: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetShortArrayCont': arrayc.c:197: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetCharArrayCont': arrayc.c:160: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetIntArrayCont': arrayc.c:92: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetBoolArrayCont': arrayc.c:123: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetStringArrayCont': arrayc.c:44: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetObjectArrayCont': arrayc.c:12: warning: 'o' may be used uninitialized in this function gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c callJNI.c -o callJNI.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c callback.c -o callback.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c fields.c -o fields.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c init.c -o init.o init.c: In function 'initJVM': init.c:111: warning: ISO C forbids assignment between function pointer and 'void *' init.c:115: warning: ISO C forbids assignment between function pointer and 'void *' gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c jri_glue.c -o jri_glue.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c loader.c -o loader.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c rJava.c -o rJava.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c tools.c -o tools.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o rJava.o tools.o -framework JavaVM -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation make -C ../jri/ make -C src JRI.jar /usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java /usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -arch i386 -arch ppc -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch i386 -arch ppc -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch i386 -arch ppc -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch i386 -arch ppc -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch i386 -arch ppc -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include gcc -arch i386 -arch ppc -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include gcc -arch i386 -arch ppc -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -dynamiclib -framework JavaVM -framework R /usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java /usr/bin/jar fc JRI.jar org libjri.jnilib rm -f libjri.jnilib cp src/libjri.jnilib libjri.jnilib /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples/rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. ** R ** inst ** preparing package for lazy loading ** help *** installing help indices >>> Building/Updating help pages for package 'rJava' Formats: text html latex example accessOp text html latex example jarray text html latex example jarrayRef-class text html latex jcall text html latex example jcast text html latex example jcastToArray text html latex example jcheck text html latex example jengine text html latex example jequals text html latex example jfield text html latex example jfloat-class text html latex jfloat text html latex jinit text html latex example jmemprof text html latex example jnew text html latex example jnull text html latex example jobjRef-class text html latex jpackage text html latex example jreflection text html latex example jserialize text html latex jsimplify text html latex example loader text html latex example show text html latex with text html latex example ** building package indices ... packaged installation of 'rJava' as rJava_0.6-4_R_i386-apple-darwin8.11.1.tar.gz * DONE (rJava) Build log for Windows 64-bit (R 2.11.x)* checking for file 'rJava/DESCRIPTION' ... OK * preparing 'rJava': * checking DESCRIPTION meta-information ... OK * cleaning src Makevars.win:20: JAVA_HOME is C:\\jdk1.4.2_04 Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:\\jdk1.4.2_04/include -IC:\\jdk1.4.2_04/include/win32 make: Nothing to be done for `clean'. * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'rJava' ... Generate Windows-specific files (src/jvm-w32) ... make: Entering directory `/cygdrive/c/tmp/Rbuild178497705/rJava/src/jvm-w32' dlltool --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a gcc -O2 -c -o findjava.o findjava.c gcc -s -o findjava.exe findjava.o make: Leaving directory `/cygdrive/c/tmp/Rbuild178497705/rJava/src/jvm-w32' Find Java... JAVA_HOME=C:/PROGRA~1/Java/JDK16~1.0_1 === Building JRI === JAVA_HOME=C:/PROGRA~1/Java/JDK16~1.0_1 R_HOME=c:/PROGRA~1/r/R-211~1.0-X Creating Makefiles ... Configuration done. make -C src JRI.jar make[1]: Entering directory `/cygdrive/c/tmp/Rbuild178497705/rJava/jri/src' C:/PROGRA~1/Java/JDK16~1.0_1/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/PROGRA~1/Java/JDK16~1.0_1/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -c -o Rengine.o Rengine.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -Ic:/PROGRA~1/r/R-211~1.0-X/include gcc -c -o jri.o jri.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -Ic:/PROGRA~1/r/R-211~1.0-X/include gcc -c -o Rcallbacks.o Rcallbacks.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -Ic:/PROGRA~1/r/R-211~1.0-X/include gcc -c -o Rinit.o Rinit.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -Ic:/PROGRA~1/r/R-211~1.0-X/include Rinit.c: In function 'initR': Rinit.c:248:21: warning: assignment from incompatible pointer type Rinit.c:254:21: warning: assignment from incompatible pointer type Rinit.c:277:5: warning: implicit declaration of function 'signal' gcc -c -o globals.o globals.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 gcc -c -o rjava.o rjava.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 make -C win32 libjvm.dll.a make[2]: Entering directory `/cygdrive/c/tmp/Rbuild178497705/rJava/jri/src/win32' dlltool --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a make[2]: Leaving directory `/cygdrive/c/tmp/Rbuild178497705/rJava/jri/src/win32' gcc -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -Lc:/PROGRA~1/r/R-211~1.0-X/src/gnuwin32 -Lc:/PROGRA~1/r/R-211~1.0-X/bin -lR -Wl,--kill-at C:/PROGRA~1/Java/JDK16~1.0_1/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/PROGRA~1/Java/JDK16~1.0_1/bin/jar fc JRI.jar org jri.dll make[1]: Leaving directory `/cygdrive/c/tmp/Rbuild178497705/rJava/jri/src' rm -f jri.dll cp src/jri.dll jri.dll C:/PROGRA~1/Java/JDK16~1.0_1/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples\rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. C:/PROGRA~1/Java/JDK16~1.0_1/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples\rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. echo "set PATH=%PATH%;c:/PROGRA~1/r/R-211~1.0-X\\bin;c:/PROGRA~1/r/R-211~1.0-X\\lib" > run.bat echo "C:/PROGRA~1/Java/JDK16~1.0_1/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat === JRI built === Configuration done. ** libs making DLL ... Makevars.win:20: JAVA_HOME is C:/PROGRA~1/Java/JDK16~1.0_1 Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c Rglue.c -o Rglue.o Rglue.c:831:13: warning: 'new_jrectRef' defined but not used gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c arrayc.c -o arrayc.o arrayc.c: In function 'RgetObjectArrayCont': arrayc.c:12:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetIntArrayCont': arrayc.c:56:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetBoolArrayCont': arrayc.c:87:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetCharArrayCont': arrayc.c:124:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetShortArrayCont': arrayc.c:161:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetByteArrayCont': arrayc.c:198:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetDoubleArrayCont': arrayc.c:229:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetFloatArrayCont': arrayc.c:260:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetLongArrayCont': arrayc.c:294:10: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetSimpleClassNames': arrayc.c:420:12: warning: 'jobj' may be used uninitialized in this function gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c callJNI.c -o callJNI.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c callback.c -o callback.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c fields.c -o fields.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c init.c -o init.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c jri_glue.c -o jri_glue.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c loader.c -o loader.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c otables.c -o otables.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c rJava.c -o rJava.o gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -O2 -Wall -gdwarf-2 -std=gnu99 -c tools.c -o tools.o gcc -shared -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Lc:/PROGRA~1/r/R-211~1.0-X/bin -lR installing to c:/tmp/Rinst178488265/rJava/libs/x64 ... done ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** MD5 sums ** testing if installed package can be loaded packaged installation of 'rJava' as rJava_0.8-5.zip * DONE (rJava) Build log for Mac OS X 10.5 (R 2.11.x)* checking for file 'rJava/DESCRIPTION' ... OK * preparing 'rJava': * checking DESCRIPTION meta-information ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution * installing *source* package 'rJava' ... checking for gcc... gcc -arch i386 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -arch i386 -std=gnu99 accepts -g... yes checking for gcc -arch i386 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc -arch i386 -std=gnu99 supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include' java libs : '-framework JavaVM' checking whether JNI programs can be compiled... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/private/tmp/Rbuild3068012844/rJava/jri) configure: running /bin/sh ./configure '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. checking build system type... i386-apple-darwin9.8.0 checking host system type... i386-apple-darwin9.8.0 checking for gcc... gcc -arch i386 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -arch i386 -std=gnu99 accepts -g... yes checking for gcc -arch i386 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok *** building fat JNI with gcc for architectures: ppc i386 x86_64 *** *** use FORCE_NATIVE=yes to avoid this and use R settings *** checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs *** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c Rglue.c -o Rglue.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c arrayc.c -o arrayc.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c callJNI.c -o callJNI.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c callback.c -o callback.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c fields.c -o fields.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c jri_glue.c -o jri_glue.o jri_glue.c: In function 'PushToREXP': jri_glue.c:24: warning: cast from pointer to integer of different size jri_glue.c: In function 'RReleaseREXP': jri_glue.c:52: warning: cast to pointer from integer of different size gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c loader.c -o loader.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c otables.c -o otables.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c rJava.c -o rJava.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/usr/local/include -fPIC -g -O2 -c tools.c -o tools.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -framework JavaVM -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation (cd ../jri && make) make -C src JRI.jar /usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java /usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -arch ppc -arch i386 -arch x86_64 -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParse': Rengine.c:112: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParse': Rengine.c:112: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniEval': Rengine.c:128: warning: cast to pointer from integer of different size Rengine.c:129: warning: cast to pointer from integer of different size Rengine.c:155: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniEval': Rengine.c:128: warning: cast to pointer from integer of different size Rengine.c:129: warning: cast to pointer from integer of different size Rengine.c:155: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniAssign': engine.c: In function 'Java_org_rosuda_JRI_Rengine_rniAssign': Rengine.c:175: warning: cast to pointer from integer of different size Rengine.c:176: warning: cast to pointer from integer of different sizeRengine.c:176: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniProtect': Rengine.c:185: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniProtect': Rengine.c:185: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniRelease': Rengine.c:197: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniRelease': Rengine.c:197: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPreserve': Rengine.c:203: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPreserve': Rengine.c:203: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPrintValue': Rengine.c:209: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPrintValue': Rengine.c:209: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParentEnv': Rengine.c:215: warning: cast to pointer from integer of different size Rengine.c:215: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParentEnv': Rengine.c:215: warning: cast to pointer from integer of different size Rengine.c:215: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniFindVar': Rengine.c:224: warning: cast to pointer from integer of different size Rengine.c:224: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniFindVar': Rengine.c:224: warning: cast to pointer from integer of different size Rengine.c:224: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniListEnv': Rengine.c:230: warning: cast to pointer from integer of different size Rengine.c:230: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniListEnv': Rengine.c:230: warning: cast to pointer from integer of different size Rengine.c:230: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSpecialObject': Rengine.c:237: warning: cast from pointer to integer of different size Rengine.c:238: warning: cast from pointer to integer of different size Rengine.c:239: warning: cast from pointer to integer of different size Rengine.c:240: warning: cast from pointer to integer of different size Rengine.c:241: warning: cast from pointer to integer of different size Rengine.c:242: warning: cast from pointer to integer of different size Rengine.c:243: warning: cast from pointer to integer of different size Rengine.c:244: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSpecialObject': Rengine.c:237: warning: cast from pointer to integer of different size Rengine.c:238: warning: cast from pointer to integer of different size Rengine.c:239: warning: cast from pointer to integer of different size Rengine.c:240: warning: cast from pointer to integer of different size Rengine.c:241: warning: cast from pointer to integer of different size Rengine.c:242: warning: cast from pointer to integer of different size Rengine.c:243: warning: cast from pointer to integer of different size Rengine.c:244: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniXrefToJava': Rengine.c:252: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniJavaToXref': Rengine.c:262: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniXrefToJava': Rengine.c:252: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetString': Rengine.c:268: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetStringArray': Rengine.c:275: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniJavaToXref': Rengine.c:262: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetIntArray': Rengine.c:281: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetRawArray': Rengine.c:287: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetString': Rengine.c:268: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI': Rengine.c:293: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetStringArray': Rengine.c:275: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetDoubleArray': Rengine.c:299: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetIntArray': Rengine.c:281: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetVector': Rengine.c:305: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetRawArray': Rengine.c:287: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniExpType': Rengine.c:311: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI': Rengine.c:293: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetDoubleArray': Rengine.c:299: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutString': Rengine.c:331: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetVector': Rengine.c:305: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutStringArray': Rengine.c:337: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniExpType': Rengine.c:311: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutIntArray': Rengine.c:343: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutRawArray': Rengine.c:349: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI': Rengine.c:355: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutString': Rengine.c:331: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArray': Rengine.c:361: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutDoubleArray': Rengine.c:367: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutStringArray': Rengine.c:337: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutVector': Rengine.c:373: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutIntArray': Rengine.c:343: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttr': Rengine.c:380: warning: cast to pointer from integer of different size Rengine.c:382: warning: cast to pointer from integer of different size Rengine.c:383: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutRawArray': Rengine.c:349: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI': Rengine.c:355: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttrNames': Rengine.c:390: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArray': Rengine.c:361: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutDoubleArray': Rengine.c:367: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutVector': Rengine.c:373: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttr': Rengine.c:380: warning: cast to pointer from integer of different size Rengine.c:382: warning: cast to pointer from integer of different size Rengine.c:383: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSetAttr': Rengine.c:422: warning: cast to pointer from integer of different size Rengine.c:424: warning: cast to pointer from integer of different size Rengine.c:424: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttrNames': Rengine.c:390: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInstallSymbol': Rengine.c:437: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetSymbolName': Rengine.c:443: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInherits': Rengine.c:453: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCons': Rengine.c:464: warning: cast to pointer from integer of different size Rengine.c:464: warning: cast to pointer from integer of different size Rengine.c:466: warning: cast to pointer from integer of different size Rengine.c:466: warning: cast to pointer from integer of different size Rengine.c:468: warning: cast to pointer from integer of different size Rengine.c:469: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSetAttr': Rengine.c:422: warning: cast to pointer from integer of different size Rengine.c:424: warning: cast to pointer from integer of different size Rengine.c:424: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInstallSymbol': Rengine.c:437: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCAR': Rengine.c:476: warning: cast to pointer from integer of different size Rengine.c:477: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetSymbolName': Rengine.c:443: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInherits': Rengine.c:453: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCDR': Rengine.c:486: warning: cast to pointer from integer of different size Rengine.c:487: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniTAG': Rengine.c:496: warning: cast to pointer from integer of different size Rengine.c:497: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCons': Rengine.c:464: warning: cast to pointer from integer of different size Rengine.c:464: warning: cast to pointer from integer of different size Rengine.c:466: warning: cast to pointer from integer of different size Rengine.c:466: warning: cast to pointer from integer of different size Rengine.c:468: warning: cast to pointer from integer of different size Rengine.c:469: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutList': Rengine.c:512: warning: cast from pointer to integer of different size Rengine.c:517: warning: cast to pointer from integer of different size Rengine.c:522: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCAR': Rengine.c:476: warning: cast to pointer from integer of different size Rengine.c:477: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetList': Rengine.c:529: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCDR': Rengine.c:486: warning: cast to pointer from integer of different size Rengine.c:556: warning: cast from pointer to integer of different sizeRengine.c:487: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniTAG': Rengine.c:496: warning: cast to pointer from integer of different size Rengine.c:497: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutList': Rengine.c:512: warning: cast from pointer to integer of different size Rengine.c:517: warning: cast to pointer from integer of different size Rengine.c:522: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetList': Rengine.c:529: warning: cast to pointer from integer of different size Rengine.c:556: warning: cast from pointer to integer of different size gcc -arch ppc -arch i386 -arch x86_64 -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include jri.c: In function 'jri_putSEXPLArray': jri.c:193: warning: cast from pointer to integer of different size jri.c: In function 'jri_putSEXPLArray': jri.c:193: warning: cast from pointer to integer of different size jri.c: In function 'jri_getObjectArray': jri.c:308: warning: cast from pointer to integer of different size jri.c: In function 'jri_getObjectArray': jri.c:308: warning: cast from pointer to integer of different size jri.c: In function 'jri_getSEXPLArray': jri.c:472: warning: cast to pointer from integer of different size jri.c: In function 'jri_getSEXPLArray': jri.c:472: warning: cast to pointer from integer of different size gcc -arch ppc -arch i386 -arch x86_64 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch ppc -arch i386 -arch x86_64 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch ppc -arch i386 -arch x86_64 -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include gcc -arch ppc -arch i386 -arch x86_64 -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include gcc -arch ppc -arch i386 -arch x86_64 -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -dynamiclib -framework JavaVM -framework R /usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java /usr/bin/jar fc JRI.jar org libjri.jnilib rm -f libjri.jnilib cp src/libjri.jnilib libjri.jnilib /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples/rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. installing to /private/tmp/Rinst3068031877/rJava/libs/i386 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded packaged installation of 'rJava' as rJava_0.8-5_R_i386-apple-darwin9.8.0.tar.gz * DONE (rJava) |