rJava
About rJava
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Version: 0.5-2
Result: OK Check time: 2008-05-20 14:37 * Installing *source* package 'rJava' ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc -std=gnu99 supports static inline... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux' java libs : '-L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/lib/i386/server -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/lib/i386 -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../lib/i386 -ljvm' checking whether JNI programs can be compiled... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/rJava/jri) configure: running /bin/sh ./configure '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c arrayc.c -o arrayc.o arrayc.c: In function 'RgetLongArrayCont': arrayc.c:330: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetFloatArrayCont': arrayc.c:296: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetDoubleArrayCont': arrayc.c:265: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetByteArrayCont': arrayc.c:234: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetShortArrayCont': arrayc.c:197: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetCharArrayCont': arrayc.c:160: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetIntArrayCont': arrayc.c:92: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetBoolArrayCont': arrayc.c:123: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetStringArrayCont': arrayc.c:44: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetObjectArrayCont': arrayc.c:12: warning: 'o' may be used uninitialized in this function gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c callback.c -o callback.o gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c callJNI.c -o callJNI.o gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c fields.c -o fields.o gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c init.c -o init.o init.c: In function 'initJVM': init.c:111: warning: ISO C forbids assignment between function pointer and 'void *' init.c:115: warning: ISO C forbids assignment between function pointer and 'void *' init.c:120: warning: dereferencing type-punned pointer will break strict-aliasing rules init.c: In function 'RinitJVM': init.c:259: warning: dereferencing type-punned pointer will break strict-aliasing rules gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c jri_glue.c -o jri_glue.o gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c loader.c -o loader.o gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c Rglue.c -o Rglue.o gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c rJava.c -o rJava.o rJava.c: In function 'getJNIEnv': rJava.c:35: warning: dereferencing type-punned pointer will break strict-aliasing rules gcc -std=gnu99 -I/usr/share/R/include -I. -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -g -O2 -Wall -pedantic -c tools.c -o tools.o gcc -std=gnu99 -shared -o rJava.so arrayc.o callback.o callJNI.o fields.o init.o jri_glue.o loader.o Rglue.o rJava.o tools.o -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/lib/i386/server -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/lib/i386 -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../lib/i386 -ljvm -L/usr/lib/R/lib -lR make -C ../jri/ make[1]: Entering directory `/rJava/jri' make -C src JRI.jar make[2]: Entering directory `/rJava/jri/src' /usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../Rengine.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java /usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -std=gnu99 -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -I/usr/share/R/include -I/usr/share/R/include -I/usr/share/R/include gcc -std=gnu99 -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -I/usr/share/R/include -I/usr/share/R/include -I/usr/share/R/include gcc -std=gnu99 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -I/usr/share/R/include -I/usr/share/R/include -I/usr/share/R/include gcc -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -I/usr/share/R/include -I/usr/share/R/include -I/usr/share/R/include Rinit.c: In function 'initR': Rinit.c:114: warning: assignment from incompatible pointer type Rinit.c:115: warning: assignment from incompatible pointer type Rinit.c:118: warning: assignment from incompatible pointer type Rinit.c:126: warning: assignment from incompatible pointer type gcc -std=gnu99 -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux gcc -std=gnu99 -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include -I/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../include/linux gcc -std=gnu99 -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -shared -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/lib/i386/server -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/lib/i386 -L/usr/lib/jvm/java-1.5.0-sun-1.5.0.14/jre/../lib/i386 -ljvm -L/usr/lib/R/lib -lR /usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../Rengine.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java /usr/bin/jar fc JRI.jar org libjri.so make[2]: Leaving directory `/rJava/jri/src' rm -f libjri.so cp src/libjri.so libjri.so /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples/rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. make[1]: Leaving directory `/rJava/jri' ** R ** inst ** preparing package for lazy loading ** help Note: removing empty section \details >>> Building/Updating help pages for package 'rJava' Formats: text html latex example accessOp text html latex example jarray text html latex example jarrayRef-class text html latex jcall text html latex example jcast text html latex example jcastToArray text html latex example jcheck text html latex example jengine text html latex example jequals text html latex example jfield text html latex example jfloat-class text html latex jfloat text html latex jinit text html latex example jmemprof text html latex example jnew text html latex example jnull text html latex example jobjRef-class text html latex jpackage text html latex example jreflection text html latex example jsimplify text html latex example loader text html latex example show text html latex ** building package indices ... * DONE (rJava) |