rJava
About rJava
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Version: 1.0-11
Result: OK Check time: 2024-03-07 20:36 Distribution log--- running mkdist for rJava (project rJava) Removing previous dist ... Copying package base ... Embedded JRI: /www/rforge/projects/rJava/checkout/rJava/jri Note: autoreconf is *not* ran automatically if configure exists. Run it manually if necessary. Removing CVS/SVN and backup files ... Building JRI dist to include ... Removing previous dist ... Copying package base ... *skipping* autoconf (configure already present) Compiling getsp ... Removing CVS/SVN and backup stuff ... Updating version ... JRI version 0.5-7 Creating package ... Done. -rw-rw-r-- 1 rforge rforge 225937 Mar 7 20:35 ../JRI_0.5-7.tar.gz JRI/ JRI/examples/ JRI/examples/rtest.java JRI/examples/rtest2.java JRI/LGPL.txt JRI/RFactor.java JRI/Mutex.java JRI/version JRI/run.in JRI/NEWS JRI/Makefile.all JRI/Makefile.in JRI/README JRI/bootstrap/ JRI/bootstrap/JRIBootstrap.java JRI/bootstrap/Makefile JRI/bootstrap/mft JRI/bootstrap/DelegatedClassLoader.java JRI/bootstrap/JRIBootstrap.h JRI/bootstrap/JRIBootstrap.c JRI/bootstrap/Boot.java JRI/bootstrap/DelegatedURLClassLoader.java JRI/bootstrap/JRIClassLoader.java JRI/Makefile.win JRI/tools/ JRI/tools/install-sh JRI/tools/config.sub JRI/tools/config.guess JRI/tools/getsp.java JRI/tools/getsp.class JRI/tools/mkinstalldirs JRI/package-info.java JRI/RList.java JRI/RConsoleOutputStream.java JRI/configure.win JRI/LICENSE JRI/configure JRI/REngine/ JRI/REngine/REXPLogical.java JRI/REngine/REXPList.java JRI/REngine/REngineInputInterface.java JRI/REngine/REXPDouble.java JRI/REngine/REXPUnknown.java JRI/REngine/REngineException.java JRI/REngine/RFactor.java JRI/REngine/REXPVector.java JRI/REngine/REXPS4.java JRI/REngine/REXPMismatchException.java JRI/REngine/REXPExpressionVector.java JRI/REngine/REngineCallbacks.java JRI/REngine/REXPString.java JRI/REngine/mkmvn.sh JRI/REngine/MutableREXP.java JRI/REngine/README.md JRI/REngine/REXPRaw.java JRI/REngine/REXPEnvironment.java JRI/REngine/REngineOutputInterface.java JRI/REngine/REngineEvalException.java JRI/REngine/REXPLanguage.java JRI/REngine/REngineStdOutput.java JRI/REngine/REngineConsoleHistoryInterface.java JRI/REngine/.github/ JRI/REngine/.github/workflows/ JRI/REngine/.github/workflows/workflow.yml JRI/REngine/Makefile JRI/REngine/package-info.java JRI/REngine/RList.java JRI/REngine/JRI/ JRI/REngine/JRI/JRIEngine.java JRI/REngine/JRI/Makefile JRI/REngine/JRI/package-info.java JRI/REngine/JRI/test/ JRI/REngine/JRI/test/Makefile JRI/REngine/JRI/test/RTest.java JRI/REngine/LICENSE JRI/REngine/REXPInteger.java JRI/REngine/REXPNull.java JRI/REngine/REngineUIInterface.java JRI/REngine/REXPJavaReference.java JRI/REngine/Rserve/ JRI/REngine/Rserve/RConnection.java JRI/REngine/Rserve/OOBInterface.java JRI/REngine/Rserve/RSession.java JRI/REngine/Rserve/RserveException.java JRI/REngine/Rserve/mkmvn.sh JRI/REngine/Rserve/protocol/ JRI/REngine/Rserve/protocol/RPacket.java JRI/REngine/Rserve/protocol/REXPFactory.java JRI/REngine/Rserve/protocol/jcrypt.java JRI/REngine/Rserve/protocol/RTalk.java JRI/REngine/Rserve/Makefile JRI/REngine/Rserve/package-info.java JRI/REngine/Rserve/src/ JRI/REngine/Rserve/src/test/ JRI/REngine/Rserve/src/test/java/ JRI/REngine/Rserve/src/test/java/org/ JRI/REngine/Rserve/src/test/java/org/rosuda/ JRI/REngine/Rserve/src/test/java/org/rosuda/rserve/ JRI/REngine/Rserve/src/test/java/org/rosuda/rserve/RserveTest.java JRI/REngine/Rserve/test/ JRI/REngine/Rserve/test/PlotDemo.java JRI/REngine/Rserve/test/test.java JRI/REngine/Rserve/test/Makefile JRI/REngine/Rserve/test/jt.java JRI/REngine/Rserve/test/StartRserve.java JRI/REngine/Rserve/StartRserve.java JRI/REngine/Rserve/RFileOutputStream.java JRI/REngine/Rserve/RFileInputStream.java JRI/REngine/Rserve/pom.xml JRI/REngine/.git JRI/REngine/REXPWrapper.java JRI/REngine/REXPFactor.java JRI/REngine/REXPReference.java JRI/REngine/REngine.java JRI/REngine/pom.xml JRI/REngine/REXPGenericVector.java JRI/REngine/REXP.java JRI/REngine/REXPSymbol.java JRI/src/ JRI/src/rjava.h JRI/src/jri.h JRI/src/Rinit.h JRI/src/rjava.c JRI/src/h2ic JRI/src/rjstring.c JRI/src/Rcallbacks.c JRI/src/Makefile.all JRI/src/Makefile.in JRI/src/globals.c JRI/src/Makefile.win JRI/src/Rdecl.h JRI/src/Rcallbacks.h JRI/src/Rinit.c JRI/src/jri.c JRI/src/Rengine.c JRI/src/globals.h JRI/src/win32/ JRI/src/win32/jvm64.def JRI/src/win32/Makefile JRI/src/win32/jvm.def JRI/src/win32/findjava.c JRI/src/rjstring.h JRI/src/config.h.in JRI/configure.ac JRI/RVector.java JRI/Makevars.win JRI/RMainLoopCallbacks.java JRI/RBool.java JRI/REXP.java JRI/Rengine.java rm -rf org *~ REngine.jar Rserve.jar doc make -C Rserve clean make[1]: Entering directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/Rserve' rm -rf org *~ protocol/*~ Rserve.jar make -C test clean make[2]: Entering directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/Rserve/test' rm -rf org *~ *.class make[2]: Leaving directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/Rserve/test' make[1]: Leaving directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/Rserve' make -C JRI clean make[1]: Entering directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/JRI' rm -rf org *~ JRIEngine.jar *.class make -C test clean make[2]: Entering directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/JRI/test' rm -rf org *.class *~ make[2]: Leaving directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/JRI/test' make[1]: Leaving directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/JRI' javac -d . -source 1.6 -target 1.6 MutableREXP.java REXP.java REXPDouble.java REXPEnvironment.java REXPExpressionVector.java REXPFactor.java REXPGenericVector.java REXPInteger.java REXPJavaReference.java REXPLanguage.java REXPList.java REXPLogical.java REXPMismatchException.java REXPNull.java REXPRaw.java REXPReference.java REXPS4.java REXPString.java REXPSymbol.java REXPUnknown.java REXPVector.java REXPWrapper.java REngine.java REngineCallbacks.java REngineConsoleHistoryInterface.java REngineEvalException.java REngineException.java REngineInputInterface.java REngineOutputInterface.java REngineStdOutput.java REngineUIInterface.java RFactor.java RList.java package-info.java warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: REXPReference.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 4 warnings jar fc REngine.jar org rm -rf org javac -d . -cp REngine.jar Rserve/OOBInterface.java Rserve/RConnection.java Rserve/RFileInputStream.java Rserve/RFileOutputStream.java Rserve/RSession.java Rserve/RserveException.java Rserve/StartRserve.java Rserve/package-info.java Rserve/protocol/REXPFactory.java Rserve/protocol/RPacket.java Rserve/protocol/RTalk.java Rserve/protocol/jcrypt.java Note: Rserve/RConnection.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Rserve/protocol/REXPFactory.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. jar fc Rserve.jar org rm -rf org rm -rf org javac -source 1.6 -target 1.6 -classpath ../REngine.jar -d . ../../Mutex.java ../../RBool.java ../../RConsoleOutputStream.java ../../REXP.java ../../RFactor.java ../../RList.java ../../RMainLoopCallbacks.java ../../RVector.java ../../Rengine.java ../../package-info.java JRIEngine.java warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 4 warnings jar fc JRIEngine.jar org rm -rf org *~ JRIEngine.jar *.class make -C test clean make[1]: Entering directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/JRI/test' rm -rf org *.class *~ make[1]: Leaving directory '/www/rforge/projects/rJava/checkout/rJava/jri/REngine/JRI/test' Compile Java classes ... rm -rfv *.class *~ javac -source 1.6 -target 1.6 ArrayDimensionException.java ArrayWrapper.java ArrayWrapper_Test.java DummyPoint.java FlatException.java NotAnArrayException.java NotComparableException.java ObjectArrayException.java PrimitiveArrayException.java RJavaArrayIterator.java RJavaArrayTools.java RJavaArrayTools_Test.java RJavaClassLoader.java RJavaComparator.java RJavaImport.java RJavaTools.java RJavaTools_Test.java RectangularArrayBuilder.java RectangularArrayBuilder_Test.java RectangularArrayExamples.java RectangularArraySummary.java TestException.java warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 4 warnings Copy compiled Java classes ... mv: cannot stat 'src/java/javadoc': No such file or directory Updating version ... rJava version 1.0-11 Creating package ... * checking for file ‘rJava/DESCRIPTION’ ... OK * preparing ‘rJava’: * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘rJava_1.0-11.tar.gz’ Done. -rw-r--r-- 1 rforge rforge 624455 Mar 7 20:35 ../rJava_1.0-11.tar.gz Build log for Windows (R 2.11.x)* checking for file 'rJava/DESCRIPTION' ... OK * preparing 'rJava': * checking DESCRIPTION meta-information ... OK * cleaning src Makevars.win:20: JAVA_HOME is C:\\jdk1.4.2_04 Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:\\jdk1.4.2_04/include -IC:\\jdk1.4.2_04/include/win32 make: Nothing to be done for `clean'. * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'rJava' ... Generate Windows-specific files (src/jvm-w32) ... make: Entering directory `/cygdrive/c/tmp/Rbuild207278002/rJava/src/jvm-w32' dlltool --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a gcc -O2 -c -o findjava.o findjava.c gcc -s -o findjava.exe findjava.o make: Leaving directory `/cygdrive/c/tmp/Rbuild207278002/rJava/src/jvm-w32' Find Java... JAVA_HOME=C:/jdk1.6 === Building JRI === JAVA_HOME=C:/jdk1.6 R_HOME=c:/PROGRA~1/r/R-211~1.0 Creating Makefiles ... Configuration done. make -C src JRI.jar make[1]: Entering directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src' C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/jdk1.6/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -c -o Rengine.o Rengine.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParse': Rengine.c:115: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniEval': Rengine.c:129: warning: cast to pointer from integer of different size Rengine.c:130: warning: cast to pointer from integer of different size Rengine.c:153: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniAssign': Rengine.c:173: warning: cast to pointer from integer of different size Rengine.c:174: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniProtect': Rengine.c:183: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniRelease': Rengine.c:195: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPreserve': Rengine.c:201: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPrintValue': Rengine.c:207: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParentEnv': Rengine.c:213: warning: cast to pointer from integer of different size Rengine.c:213: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniFindVar': Rengine.c:222: warning: cast to pointer from integer of different size Rengine.c:222: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniListEnv': Rengine.c:228: warning: cast to pointer from integer of different size Rengine.c:228: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSpecialObject': Rengine.c:235: warning: cast from pointer to integer of different size Rengine.c:236: warning: cast from pointer to integer of different size Rengine.c:237: warning: cast from pointer to integer of different size Rengine.c:238: warning: cast from pointer to integer of different size Rengine.c:239: warning: cast from pointer to integer of different size Rengine.c:240: warning: cast from pointer to integer of different size Rengine.c:241: warning: cast from pointer to integer of different size Rengine.c:242: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniXrefToJava': Rengine.c:250: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniJavaToXref': Rengine.c:260: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetString': Rengine.c:266: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetStringArray': Rengine.c:273: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetIntArray': Rengine.c:279: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetRawArray': Rengine.c:285: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI': Rengine.c:291: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetDoubleArray': Rengine.c:297: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetVector': Rengine.c:303: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniExpType': Rengine.c:309: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutString': Rengine.c:329: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutStringArray': Rengine.c:335: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutIntArray': Rengine.c:341: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutRawArray': Rengine.c:347: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI': Rengine.c:353: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArray': Rengine.c:359: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutDoubleArray': Rengine.c:365: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutVector': Rengine.c:371: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttr': Rengine.c:378: warning: cast to pointer from integer of different size Rengine.c:380: warning: cast to pointer from integer of different size Rengine.c:381: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttrNames': Rengine.c:388: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSetAttr': Rengine.c:420: warning: cast to pointer from integer of different size Rengine.c:422: warning: cast to pointer from integer of different size Rengine.c:422: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInstallSymbol': Rengine.c:435: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetSymbolName': Rengine.c:441: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInherits': Rengine.c:451: warning: cast to pointer from integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCons': Rengine.c:462: warning: cast to pointer from integer of different size Rengine.c:462: warning: cast to pointer from integer of different size Rengine.c:464: warning: cast to pointer from integer of different size Rengine.c:464: warning: cast to pointer from integer of different size Rengine.c:466: warning: cast to pointer from integer of different size Rengine.c:467: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCAR': Rengine.c:474: warning: cast to pointer from integer of different size Rengine.c:475: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCDR': Rengine.c:484: warning: cast to pointer from integer of different size Rengine.c:485: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniTAG': Rengine.c:494: warning: cast to pointer from integer of different size Rengine.c:495: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutList': Rengine.c:510: warning: cast from pointer to integer of different size Rengine.c:515: warning: cast to pointer from integer of different size Rengine.c:520: warning: cast from pointer to integer of different size Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetList': Rengine.c:527: warning: cast to pointer from integer of different size Rengine.c:554: warning: cast from pointer to integer of different size gcc -c -o jri.o jri.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include jri.c: In function 'jri_putSEXPLArray': jri.c:193: warning: cast from pointer to integer of different size jri.c: In function 'jri_getObjectArray': jri.c:308: warning: cast from pointer to integer of different size jri.c: In function 'jri_getSEXPLArray': jri.c:472: warning: cast to pointer from integer of different size gcc -c -o Rcallbacks.o Rcallbacks.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include gcc -c -o Rinit.o Rinit.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -Ic:/PROGRA~1/r/R-211~1.0/include Rinit.c: In function 'initR': Rinit.c:248: warning: assignment from incompatible pointer type Rinit.c:254: warning: assignment from incompatible pointer type Rinit.c:277: warning: implicit declaration of function 'signal' gcc -c -o globals.o globals.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 gcc -c -o rjava.o rjava.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 make -C win32 libjvm.dll.a make[2]: Entering directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src/win32' dlltool --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a make[2]: Leaving directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src/win32' gcc -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -Lc:/PROGRA~1/r/R-211~1.0/src/gnuwin32 -Lc:/PROGRA~1/r/R-211~1.0/bin -lR -Wl,--kill-at C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/jdk1.6/bin/jar fc JRI.jar org jri.dll make[1]: Leaving directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src' rm -f jri.dll cp src/jri.dll jri.dll C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples\rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples\rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. echo "set PATH=%PATH%;c:/PROGRA~1/r/R-211~1.0\\bin;c:/PROGRA~1/r/R-211~1.0\\lib" > run.bat echo "C:/jdk1.6/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat === JRI built === Configuration done. ** libs making DLL ... Makevars.win:20: JAVA_HOME is C:/jdk1.6 Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c Rglue.c -o Rglue.o Rglue.c:831: warning: 'new_jrectRef' defined but not used gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c arrayc.c -o arrayc.o arrayc.c: In function 'RgetShortArrayCont': arrayc.c:161: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetCharArrayCont': arrayc.c:124: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetBoolArrayCont': arrayc.c:87: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetLongArrayCont': arrayc.c:294: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetFloatArrayCont': arrayc.c:260: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetDoubleArrayCont': arrayc.c:229: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetIntArrayCont': arrayc.c:56: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetByteArrayCont': arrayc.c:198: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetObjectArrayCont': arrayc.c:12: warning: 'o' may be used uninitialized in this function arrayc.c: In function 'RgetSimpleClassNames': arrayc.c:420: warning: 'jobj' may be used uninitialized in this function gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c callJNI.c -o callJNI.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c callback.c -o callback.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c fields.c -o fields.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c init.c -o init.o init.c: In function 'initJVM': init.c:140: warning: dereferencing type-punned pointer will break strict-aliasing rules init.c: In function 'RinitJVM': init.c:291: warning: dereferencing type-punned pointer will break strict-aliasing rules gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c jri_glue.c -o jri_glue.o jri_glue.c: In function 'PushToREXP': jri_glue.c:24: warning: cast from pointer to integer of different size jri_glue.c: In function 'RReleaseREXP': jri_glue.c:52: warning: cast to pointer from integer of different size gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c loader.c -o loader.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c otables.c -o otables.o gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c rJava.c -o rJava.o rJava.c: In function 'getJNIEnv': rJava.c:209: warning: dereferencing type-punned pointer will break strict-aliasing rules gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c tools.c -o tools.o gcc -shared -s -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Lc:/PROGRA~1/r/R-211~1.0/bin -lR installing to c:/tmp/Rinst207243237/rJava/libs ... done ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** MD5 sums ** testing if installed package can be loaded packaged installation of 'rJava' as rJava_0.8-7.zip * DONE (rJava) Build log for Windows 64-bit (R 2.11.x)* checking for file 'rJava/DESCRIPTION' ... OK * preparing 'rJava': * checking DESCRIPTION meta-information ... OK * cleaning src Makevars.win:20: JAVA_HOME is C:\\jdk1.4.2_04 Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0-X/src/include -IC:\\jdk1.4.2_04/include -IC:\\jdk1.4.2_04/include/win32 make: Nothing to be done for `clean'. * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'rJava' ... Generate Windows-specific files (src/jvm-w32) ... make: Entering directory `/cygdrive/c/tmp/Rbuild279201849/rJava/src/jvm-w32' x86_64-w64-mingw32-dlltool --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a x86_64-w64-mingw32-gcc -O2 -c -o findjava.o findjava.c x86_64-w64-mingw32-gcc -s -o findjava.exe findjava.o make: Leaving directory `/cygdrive/c/tmp/Rbuild279201849/rJava/src/jvm-w32' Find Java... JAVA_HOME=C:/PROGRA~1/Java/JDK16~1.0_1 === Building JRI === JAVA_HOME=C:/PROGRA~1/Java/JDK16~1.0_1 R_HOME=c:/PROGRA~1/r/R-211~1.0-X Creating Makefiles ... Configuration done. make -C src JRI.jar make[1]: Entering directory `/cygdrive/c/tmp/Rbuild279201849/rJava/jri/src' C:/PROGRA~1/Java/JDK16~1.0_1/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/PROGRA~1/Java/JDK16~1.0_1/bin/javah -d . -classpath . org.rosuda.JRI.Rengine x86_64-w64-mingw32-gcc -c -o Rengine.o Rengine.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -Ic:/PROGRA~1/r/R-211~1.0-X/include x86_64-w64-mingw32-gcc -c -o jri.o jri.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -Ic:/PROGRA~1/r/R-211~1.0-X/include x86_64-w64-mingw32-gcc -c -o Rcallbacks.o Rcallbacks.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 -Ic:/PROGRA~1/r/R-211~1.0-X/include x86_64-w64-mingw32-gcc -c -o Rinit.o Rinit.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -Ic:/PROGRA~1/r/R-211~1.0-X/include Rinit.c: In function 'initR': Rinit.c:248:21: warning: assignment from incompatible pointer type Rinit.c:254:21: warning: assignment from incompatible pointer type Rinit.c:277:5: warning: implicit declaration of function 'signal' x86_64-w64-mingw32-gcc -c -o globals.o globals.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 x86_64-w64-mingw32-gcc -c -o rjava.o rjava.c -O2 -Wall -gdwarf-2 -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK16~1.0_1/include -IC:/PROGRA~1/Java/JDK16~1.0_1/include/win32 make -C win32 libjvm.dll.a make[2]: Entering directory `/cygdrive/c/tmp/Rbuild279201849/rJava/jri/src/win32' x86_64-w64-mingw32-dlltool --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a make[2]: Leaving directory `/cygdrive/c/tmp/Rbuild279201849/rJava/jri/src/win32' x86_64-w64-mingw32-gcc -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -Lc:/PROGRA~1/r/R-211~1.0-X/src/gnuwin32 -Lc:/PROGRA~1/r/R-211~1.0-X/bin -lR -Wl,--kill-at Rengine.o: In function `Java_org_rosuda_JRI_Rengine_rniStop': c:\tmp\Rbuild279201849\rJava\jri\src/Rengine.c:639: undefined reference to `_imp__UserBreak' Rinit.o: In function `my_onintr': c:\tmp\Rbuild279201849\rJava\jri\src/Rinit.c:182: undefined reference to `_imp__UserBreak' collect2: ld returned 1 exit status make[1]: *** [jri.dll] Error 1 make[1]: Leaving directory `/cygdrive/c/tmp/Rbuild279201849/rJava/jri/src' make: *** [src/JRI.jar] Error 2 **** WARNING: JRI could NOT be built Set IGNORE=1 if you want to build rJava anyway. ERROR: configuration failed for package 'rJava' * removing 'c:/tmp/Rinst279282034/rJava' ERROR * installation failed Build log for Mac OS X 10.5 (R 2.16.x)* installing *source* package 'rJava' ... checking for gcc... gcc -arch i386 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -arch i386 -std=gnu99 accepts -g... yes checking for gcc -arch i386 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for java... /usr/bin/java checking Java environment home... in /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/jni.h... yes checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/./jni_md.h... yes checking whether JNI programs can be compiled... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/Volumes/Tiger/Builds/rforge/builds/osx9-2.16/rJava/jri) configure: running /bin/sh ./configure '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. checking build system type... i386-apple-darwin9.8.0 checking host system type... i386-apple-darwin9.8.0 checking for gcc... gcc -arch i386 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -arch i386 -std=gnu99 accepts -g... yes checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E checking for egrep... grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for java... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/java checking for javac... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javac checking for javah... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javah checking for jar... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/jar checking whether Java interpreter works... yes checking for Java environment... in /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/jni.h... yes checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/./jni_md.h... yes checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok === building universal JNI library - use FORCE_NATIVE=yes to avoid this === checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs *** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c Rglue.c -o Rglue.o Rglue.c: In function 'RinitJVM': Rglue.c:207: warning: assignment discards qualifiers from pointer target type Rglue.c:214: warning: assignment discards qualifiers from pointer target type Rglue.c: In function 'Rpar2jvalue': Rglue.c:299: warning: passing argument 2 of 'newString' discards qualifiers from pointer target type Rglue.c:306: warning: passing argument 2 of 'newString' discards qualifiers from pointer target type Rglue.c:391: warning: assignment discards qualifiers from pointer target type Rglue.c:396: warning: assignment discards qualifiers from pointer target type Rglue.c: In function 'RcallMethod': Rglue.c:845: warning: assignment discards qualifiers from pointer target type Rglue.c:864: warning: assignment discards qualifiers from pointer target type Rglue.c: In function 'RcallStaticMethod': Rglue.c:1041: warning: assignment discards qualifiers from pointer target type Rglue.c:1051: warning: assignment discards qualifiers from pointer target type Rglue.c:1057: warning: assignment discards qualifiers from pointer target type Rglue.c: In function 'RgetField': Rglue.c:1211: warning: assignment discards qualifiers from pointer target type Rglue.c:1217: warning: assignment discards qualifiers from pointer target type Rglue.c: In function 'RcreateObject': Rglue.c:1311: warning: assignment discards qualifiers from pointer target type Rglue.c: In function 'RcreateArray': Rglue.c:1404: warning: passing argument 2 of 'newString' discards qualifiers from pointer target type Rglue.c:1432: warning: initialization discards qualifiers from pointer target type gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c callJNI.c -o callJNI.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c callback.c -o callback.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c jri_glue.c -o jri_glue.o jri_glue.c: In function 'PushToREXP': jri_glue.c:24: warning: assignment discards qualifiers from pointer target type gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c rJava.c -o rJava.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rJava.so Rglue.o callJNI.o callback.o jri_glue.o rJava.o -framework JavaVM -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation make -C ../jri/ make -C src JRI.jar /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -arch i386 -arch ppc -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch i386 -arch ppc -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include gcc -arch i386 -arch ppc -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include Rcallbacks.c: In function 'Re_loadhistory': Rcallbacks.c:274: warning: assignment discards qualifiers from pointer target type Rcallbacks.c: In function 'Re_savehistory': Rcallbacks.c:308: warning: assignment discards qualifiers from pointer target type Rcallbacks.c: In function 'Re_loadhistory': Rcallbacks.c:274: warning: assignment discards qualifiers from pointer target type Rcallbacks.c: In function 'Re_savehistory': Rcallbacks.c:308: warning: assignment discards qualifiers from pointer target type gcc -arch i386 -arch ppc -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include Rinit.c: In function 'initR': Rinit.c:114: warning: assignment from incompatible pointer type Rinit.c:115: warning: assignment from incompatible pointer type Rinit.c:116: warning: assignment from incompatible pointer type Rinit.c:121: warning: assignment from incompatible pointer type Rinit.c: In function 'initR': Rinit.c:114: warning: assignment from incompatible pointer type Rinit.c:115: warning: assignment from incompatible pointer type Rinit.c:116: warning: assignment from incompatible pointer type Rinit.c:121: warning: assignment from incompatible pointer type gcc -arch i386 -arch ppc -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. gcc -arch i386 -arch ppc -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. gcc -arch i386 -arch ppc -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -dynamiclib -framework JavaVM -framework R Undefined symbols: "_Rf_checkArity", referenced from: _Re_loadhistory in Rcallbacks.o _Re_savehistory in Rcallbacks.o ld: symbol(s) not found collect2: ld returned 1 exit status Undefined symbols: "_Rf_checkArity", referenced from: _Re_loadhistory in Rcallbacks.o _Re_savehistory in Rcallbacks.o ld: symbol(s) not found collect2: ld returned 1 exit status lipo: can't open input file: /var/tmp//ccOsg8Y3.out (No such file or directory) make[2]: *** [libjri.jnilib] Error 1 make[1]: *** [src/JRI.jar] Error 2 make: *** [jri] Error 2 ERROR: compilation failed for package 'rJava' * removing '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/rJava' * restoring previous '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/rJava' Build log for Windows 7 (R 3.0.x) (rJava 0.9-5) - building i386 * installing to library 'z:/rforge/Rlib/win7-3.0' * installing *source* package 'rJava' ... Generate Windows-specific files (src/jvm-w32) ... make: Entering directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/src/jvm-w32' dlltool --as as -m i386 --as-flags --32 --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a gcc -m32 -O2 -c -o findjava.o findjava.c gcc -m32 -s -o findjava.exe findjava.o make: Leaving directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/src/jvm-w32' Find Java... JAVA_HOME=C:/JDK1~1.6-I === Building JRI === JAVA_HOME=C:/JDK1~1.6-I R_HOME=C:/PROGRA~1/r/r-3.0 Creating Makefiles ... Configuration done. make -C src JRI.jar make[1]: Entering directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src' C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/JDK1~1.6-I/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -m32 -c -o Rengine.o Rengine.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -IC:/PROGRA~1/r/r-3.0/include Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParse': Rengine.c:121:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniEval': Rengine.c:135:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:136:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:159:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniAssign': Rengine.c:179:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:180:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniProtect': Rengine.c:189:2: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniRelease': Rengine.c:201:27: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPreserve': Rengine.c:207:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPrintValue': Rengine.c:213:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParentEnv': Rengine.c:219:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:219:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniFindVar': Rengine.c:228:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:228:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniListEnv': Rengine.c:234:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:234:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSpecialObject': Rengine.c:241:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:242:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:243:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:244:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:245:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:246:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:247:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:248:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniXrefToJava': Rengine.c:256:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniJavaToXref': Rengine.c:266:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetString': Rengine.c:272:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetStringArray': Rengine.c:279:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetIntArray': Rengine.c:285:35: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetRawArray': Rengine.c:291:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI': Rengine.c:297:37: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetDoubleArray': Rengine.c:303:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetVector': Rengine.c:309:35: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniExpType': Rengine.c:315:25: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutString': Rengine.c:335:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutStringArray': Rengine.c:341:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutIntArray': Rengine.c:347:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutRawArray': Rengine.c:353:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI': Rengine.c:359:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArray': Rengine.c:365:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutDoubleArray': Rengine.c:371:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutVector': Rengine.c:377:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttr': Rengine.c:384:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:386:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:387:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttrNames': Rengine.c:394:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSetAttr': Rengine.c:426:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:428:15: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:428:53: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInstallSymbol': Rengine.c:441:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetSymbolName': Rengine.c:447:32: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInherits': Rengine.c:457:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCons': Rengine.c:468:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:468:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:470:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:470:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:472:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:473:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCAR': Rengine.c:480:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:481:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCDR': Rengine.c:490:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:491:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniTAG': Rengine.c:500:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:501:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutList': Rengine.c:516:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c:521:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:526:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetList': Rengine.c:533:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] Rengine.c:560:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] gcc -m32 -c -o jri.o jri.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -IC:/PROGRA~1/r/r-3.0/include jri.c: In function 'jri_putSEXPLArray': jri.c:193:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] jri.c: In function 'jri_getObjectArray': jri.c:308:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] jri.c: In function 'jri_getSEXPLArray': jri.c:472:31: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -m32 -c -o Rcallbacks.o Rcallbacks.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -IC:/PROGRA~1/r/r-3.0/include gcc -m32 -c -o Rinit.o Rinit.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/r/r-3.0/include Rinit.c: In function 'initR': Rinit.c:250:21: warning: assignment from incompatible pointer type [enabled by default] Rinit.c:256:21: warning: assignment from incompatible pointer type [enabled by default] Rinit.c:279:5: warning: implicit declaration of function 'signal' [-Wimplicit-function-declaration] gcc -m32 -c -o globals.o globals.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 gcc -m32 -c -o rjava.o rjava.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 make -C win32 libjvm.dll.a make[2]: Entering directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src/win32' dlltool --as as -m i386 --as-flags --32 --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a make[2]: Leaving directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src/win32' gcc -m32 -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -LC:/PROGRA~1/r/r-3.0/src/gnuwin32 -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR -Wl,--kill-at C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/JDK1~1.6-I/bin/jar fc JRI.jar org jri.dll make[1]: Leaving directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src' rm -f jri.dll cp src/jri.dll jri.dll C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples\rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples\rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. echo "set PATH=%PATH%;C:/PROGRA~1/r/r-3.0\\bin;C:/PROGRA~1/r/r-3.0\\lib" > run.bat echo "C:/JDK1~1.6-I/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat === JRI built === Configuration done. ** libs Warning: this package has a non-empty 'configure.win' file, so building only the main architecture Makevars.win:20: JAVA_HOME is C:/JDK1~1.6-I Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rglue.c -o Rglue.o Rglue.c:836:13: warning: 'new_jrectRef' defined but not used [-Wunused-function] gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c arrayc.c -o arrayc.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c callJNI.c -o callJNI.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c callback.c -o callback.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fields.c -o fields.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c jri_glue.c -o jri_glue.o jri_glue.c: In function 'PushToREXP': jri_glue.c:24:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] jri_glue.c: In function 'RReleaseREXP': jri_glue.c:52:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c loader.c -o loader.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c otables.c -o otables.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rJava.c -o rJava.o gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c tools.c -o tools.o gcc -m32 -shared -s -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR installing via 'install.libs.R' to z:/rforge/Rlib/win7-3.0/rJava ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (rJava) - building x64 * installing to library 'z:/rforge/Rlib/win7-3.0' * installing *source* package 'rJava' ... Generate Windows-specific files (src/jvm-w32) ... make: Entering directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/src/jvm-w32' dlltool --as as -m i386:x86-64 --as-flags --64 --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a gcc -m64 -O2 -c -o findjava.o findjava.c gcc -m64 -s -o findjava.exe findjava.o make: Leaving directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/src/jvm-w32' Find Java... JAVA_HOME=C:/JDK1~1.6-X === Building JRI === JAVA_HOME=C:/JDK1~1.6-X R_HOME=C:/PROGRA~1/r/r-3.0 Creating Makefiles ... Configuration done. make -C src JRI.jar make[1]: Entering directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src' C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/JDK1~1.6-X/bin/javah -d . -classpath . org.rosuda.JRI.Rengine gcc -m64 -c -o Rengine.o Rengine.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -IC:/PROGRA~1/r/r-3.0/include gcc -m64 -c -o jri.o jri.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -IC:/PROGRA~1/r/r-3.0/include gcc -m64 -c -o Rcallbacks.o Rcallbacks.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -IC:/PROGRA~1/r/r-3.0/include gcc -m64 -c -o Rinit.o Rinit.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/r/r-3.0/include Rinit.c: In function 'initR': Rinit.c:250:21: warning: assignment from incompatible pointer type [enabled by default] Rinit.c:256:21: warning: assignment from incompatible pointer type [enabled by default] Rinit.c:279:5: warning: implicit declaration of function 'signal' [-Wimplicit-function-declaration] gcc -m64 -c -o globals.o globals.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 gcc -m64 -c -o rjava.o rjava.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 make -C win32 libjvm.dll.a make[2]: Entering directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src/win32' dlltool --as as -m i386:x86-64 --as-flags --64 --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a make[2]: Leaving directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src/win32' gcc -m64 -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -LC:/PROGRA~1/r/r-3.0/src/gnuwin32 -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR -Wl,--kill-at C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java C:/JDK1~1.6-X/bin/jar fc JRI.jar org jri.dll make[1]: Leaving directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src' rm -f jri.dll cp src/jri.dll jri.dll C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java Note: examples\rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java Note: examples\rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. echo "set PATH=%PATH%;C:/PROGRA~1/r/r-3.0\\bin;C:/PROGRA~1/r/r-3.0\\lib" > run.bat echo "C:/JDK1~1.6-X/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat === JRI built === Configuration done. ** libs Warning: this package has a non-empty 'configure.win' file, so building only the main architecture Makevars.win:20: JAVA_HOME is C:/JDK1~1.6-X Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Rglue.c -o Rglue.o Rglue.c:836:13: warning: 'new_jrectRef' defined but not used [-Wunused-function] gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c arrayc.c -o arrayc.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c callJNI.c -o callJNI.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c callback.c -o callback.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fields.c -o fields.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c jri_glue.c -o jri_glue.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c loader.c -o loader.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c otables.c -o otables.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rJava.c -o rJava.o gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c tools.c -o tools.o gcc -m64 -shared -s -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR installing via 'install.libs.R' to z:/rforge/Rlib/win7-3.0/rJava ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (rJava) |